Projects

Bioinformatic projects I worked on in the past

GeneScanner

Takes output from GeneScan software, perform automated cleaning and exon assignment. Source code not released. Contact me at bio.weiyuan@gmail.com if you wish to use acquire it.

sample_plot.png_token=GHSAT0AAAAAABNBYJ5XBAQIUROJM46FHOV4YQ27BIA.png

PRIMERg

Optimal primer design for highly homologous genes on the same genome. GitHub

Pangenome conserved sites analysis

Mining Brassica genomes with HMM for homologs of Arabidopsis thaliana gene to get pangenome conserved sites. GitHub

Hunting jumping genes

Undergrad assignment. Found positions, orientation and functional consequence of the transposon inserts in the genome of yeast strain S288C using next-generation sequencing data. GitHub