Projects

Bioinformatic projects I worked on in the past

GeneScanner

Takes output from GeneScan software, perform automated cleaning and exon assignment. Source code not released. Contact me at bio.weiyuan@gmail.com if you wish to use acquire it.

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PRIMERg

Optimal primer design for highly homologous genes on the same genome. GitHub

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Pangenome conserved sites analysis

Mining Brassica genomes with HMM for homologs of Arabidopsis thaliana gene to get pangenome conserved sites. GitHub

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Hunting jumping genes

Undergrad assignment. Found positions, orientation and functional consequence of the transposon inserts in the genome of yeast strain S288C using next-generation sequencing data. GitHub

Bouncy Castle